|
|
|
| |
|
| |
BIOINFO1/SMPSERVE Services |
| |
The
BIOINFO1/SMPSERVE services are running on a Dell R900 server
dedicated for the support of bioinformatics application services
and general purpose computing application services. The system
is equipped with 16 processor cores and running Redhat
Enterprise Linux with built-in GNU C/C++ and Fortran compilers.
Staff/students with valid HKU Portal UID can apply for an
account to run the following application services on the system.
- Bioinformatics application services
- EMBOSS
- NCBI BLAST
- FASTA
- MFOLD
-
ReadSeq
- Glimmer
- ClustalW
- DIALIGN2
- PHYLIP
- FASTDNAML
-
Scan_for_matches
- HMMER
- CAP
- SAPS
- Phrap/Consed
- General Purpose Computing application services
- GIS data (data access only)
- Matlab R2009a (Signal Processing Tool, Simulink, Neural Network)
- Compilers
- GNU C/C++ Compiler v4.1.1
- GNU Fortran 77 Compiler v3.4.6
- PERL v5.8.8
- Java JDK v1.6.0_14
- Hardware Configuration
- 4 x 2.93GHz Quad Core Xeon MP Processors (total 16 processor cores)
- 16GB of memory
- connection to Dell MD3000i iSCSI storage about 2TB capacity
- Aggregated GLOPS = 93.76 (theoretical peak)
- Aggregated SPECfp_rate2006 = 108
- Aggregated SPECint_rate2006 = 177
- Operating System
- Redhat Enterprise Linux v5
|
|
|
|
